test 220218_0953 - Items - D4Science Catalogue

test 220218_0953

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Causative Agent

Description: Causative Agent

Field	Value
AMRMethod	Dilution method according to EUCAST recommendations
AMRProfile	AMP, SMX, STR
CausativeAgent	Astrovirus
Genogroup	GI.b_GI.6
Genogroup	4,5,12:i:-
GenogroupProtocol	Kageyama et al. 2003
MLST	ST00000
MLSTScheme	L. monocytogenes MLST database, Institut Pasteur (http://bigsdb.web.pasteur.fr/listeria/) (Moura et al. 2016)
MLVAProfile	0-0-0-0-0
MLVAProtocol	STTR9-5-6-10-3
PFGEProtocol	Standard PulseNet Salmonella PFGE
PFGETyped	yes
Phagetype	PT8
PhagetypeStandard	Anderson et al. 1977
Serotype	O6:K15:H16
SerotypeMethod	Jensen et al. 2016
VirulenceProfile	eae, stx1a, stx2a
VirulenceProfileDetectionMethod	DNA hybridization with specific DNA probes
WasTheIsolateSequenced	Yes, partial

Epidata

Description: Epidata

Field	Value
Cases	1
Countries	Denmark
Hospitalized	1
Men	1
MultipleStrains	yes; see no of cases in the outbreak in the first row of this outbreak, agentID 01
Old	1
OutbreakDuration	1
Setting	Household
SingleCountryOutbreak	yes
Start date	2018-02-01 00:00
TravelCountry	Afghanistan
TravelRelated	yes
Women	1
Young	1

Food Source

Description: Food Source

Field	Value
A_ProcessingPreparationConsumption	Unpasteurized
B_ProcessingPreparationConsumption	Liquid or Frozen
CountryOriginOfContamination	Unknown
FoodOriginOfContamination	Major Food Type, Specific Food Subtype or Food Subtype Varieties
FoodSubtypeVarieties	Beef
MajorFoodSubtype	Solid or semisolid dairy products
MajorFoodType	Dairy
OtherFoodsourceInfo	milk

Report Details

Description: Report Details

Field	Value
EvidenceForOutbreak	Epidemiological
Reference	https://www.ncbi.nlm.nih.gov/pubmed/19134229

Additional Info

Field	Value
system:type	FoodOutbreakRecord

Management Info